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1

The myth of bacterial species and speciation

Jeffrey G. Lawrence, Adam C. Retchless

Journal:

Biology & Philosophy

Year:

2010

Language:

english

File:

PDF, 367 KB

english, 2010

2

Distribution of Neisseria meningitidis serogroup B (NmB) vaccine antigens in meningococcal disease causing isolates in the United States during 2009-2014, prior to NmB vaccine licensure

Chang, How-Yi, Vuong, Jeni, Hu, Fang, Liberator, Paul, Chen, Alex, Kretz, Cecilia B., Blain, Amy, Hao, Li, Retchless, Adam C., Whaley, Melissa J., Anderson, Annaliesa S., Wang, Xin

Journal:

Journal of Infection

Year:

2019

Language:

english

File:

PDF, 844 KB

english, 2019

3

Toward a Global Genomic Epidemiology of Meningococcal Disease

Retchless, Adam C, Fox, LeAnne M, Maiden, Martin C J, Smith, Vincent, Harrison, Lee H, Glennie, Linda, Harrison, Odile B, Wang, Xin

Journal:

The Journal of Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 290 KB

english, 2019

4

Full Molecular Typing of Neisseria meningitidis Directly from Clinical Specimens for Outbreak Investigation

Itsko, Mark, Retchless, Adam C., Joseph, Sandeep J., Turner, Abigail Norris, Bazan, Jose A., Sadji, Adodo Yao, OuÃ©draogo-TraorÃ©, Rasmata, Wang, Xin

Journal:

Journal of Clinical Microbiology

Year:

2020

File:

PDF, 1.89 MB

2020

5

Quantification of codon selection for comparative bacterial genomics

Adam C Retchless, Jeffrey G Lawrence

Journal:

Year:

2011

Language:

english

File:

PDF, 778 KB

english, 2011

6

Phylogenetic incongruence arising from fragmented speciation in enteric bacteria

Adam C. Retchless, Jeffrey G. Lawrence and W. Ford Doolittle

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.86 MB

english, 2010

7

Emergence of a new Neisseria meningitidis clonal complex 11 lineage 11.2 clade as an effective urogenital pathogen

Tzeng, Yih-Ling, Bazan, Jose A., Turner, Abigail Norris, Wang, Xin, Retchless, Adam C., Read, Timothy D., Toh, Evelyn, Nelson, David E., Del Rio, Carlos, Stephens, David S.

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 824 KB

english, 2017

8

Large Cluster of Neisseria meningitidis Urethritis in Columbus, Ohio, 2015

Bazan, Jose A., Turner, Abigail Norris, Kirkcaldy, Robert D., Retchless, Adam C., Kretz, Cecilia B., Briere, Elizabeth, Tzeng, Yih-Ling, Stephens, David S., Maierhofer, Courtney, Del Rio, Carlos, Abra

Journal:

Clinical Infectious Diseases

Year:

2017

Language:

english

File:

PDF, 285 KB

english, 2017

9

Neisseria genomics: current status and future perspectives

Harrison, Odile B., Schoen, Christoph, Retchless, Adam C., Wang, Xin, Jolley, Keith A., Bray, James E., Maiden, Martin C. J.

Journal:

Pathogens and Disease

Year:

2017

Language:

english

File:

PDF, 497 KB

english, 2017

10

The Establishment and Diversification of Epidemic-Associated Serogroup W Meningococcus in the African Meningitis Belt, 1994 to 2012

Retchless, Adam C., Hu, Fang, Ouédraogo, Abdoul-Salam, Diarra, Seydou, Knipe, Kristen, Sheth, Mili, Rowe, Lori A., Sangaré, Lassana, Ky Ba, Absetou, Ouangraoua, Soumeya, Batra, Dhwani, Novak, Ryan T.,

Journal:

Year:

2016

Language:

english

File:

PDF, 408 KB

english, 2016

11

[ACM Press the 8th ACM International Conference - Boston, Massachusetts, USA (2017.08.20-2017.08.23)] Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17 - Automated Next Generation Sequencing Bioinformatics Pipelines for Pathogen Discovery and Surveillance

Okomo-Adhiambo, Margaret, Retchless, Adam, Oberste, Steve, Rota, Paul, Wang, Xin, Khan, Agha N., Ramos, Edward, Kelly, Reagan, Jain, Yatish, Tatusov, Roman, Montmayeur, Anna, Doho, Gregory, Marine, Ra

Year:

2017

Language:

english

File:

PDF, 513 KB

english, 2017

12

Expansion of a urethritis-associated Neisseria meningitidis clade in the United States with concurrent acquisition of N. gonorrhoeae alleles

Retchless, Adam C., Kretz, Cécilia B., Chang, How-Yi, Bazan, Jose A., Abrams, A. Jeanine, Norris Turner, Abigail, Jenkins, Laurel T., Trees, David L., Tzeng, Yih-Ling, Stephens, David S., MacNeil, Jes

Journal:

Year:

2018

Language:

english

File:

PDF, 968 KB

english, 2018

13

Molecular characterization of invasive meningococcal isolates in Burkina Faso as the relative importance of serogroups X and W increases, 2008–2012

Retchless, Adam C., Congo-Ouédraogo, Malika, Kambiré, Dinanibè, Vuong, Jeni, Chen, Alex, Hu, Fang, Ba, Absetou Ky, Ouédraogo, Abdoul-Salam, Hema-Ouangraoua, Soumeya, Patel, Jaymin C., Traoré, Rasmata

Journal:

BMC Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 936 KB

english, 2018

14

BMScan: using whole genome similarity to rapidly and accurately identify bacterial meningitis causing species

Topaz, Nadav, Boxrud, Dave, Retchless, Adam C., Nichols, Megan, Chang, How-Yi, Hu, Fang, Wang, Xin

Journal:

BMC Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 1.16 MB

english, 2018

15

Outbreak of Neisseria meningitidis serogroup C outside the meningitis belt—Liberia, 2017: an epidemiological and laboratory investigation

Bozio, Catherine H, Vuong, Jeni, Dokubo, E Kainne, Fallah, Mosoka P, McNamara, Lucy A, Potts, Caelin C, Doedeh, John, Gbanya, Miatta, Retchless, Adam C, Patel, Jaymin C, Clark, Thomas A, Kohar, Henry,

Journal:

The Lancet Infectious Diseases

Year:

2018

Language:

english

File:

PDF, 985 KB

english, 2018

16

Heteroresistance to the model antimicrobial peptide polymyxin B in the emerging Neisseria meningitidis linage11 .2 urethritis clade: mutations in the pilMNOPQ operon

Tzeng, Yih-Ling, Berman, Zachary, Toh, Evelyn, Bazan, Jose A., Turner, Abigail Norris, Retchless, Adam C., Wang, Xin, Nelson, David E., Stephens, David S.

Journal:

Molecular Microbiology

Year:

2018

Language:

english

File:

PDF, 612 KB

english, 2018

17

Whole-Genome Characterization of Epidemic Neisseria meningitidis Serogroup C and Resurgence of Serogroup W, Niger, 2015

Kretz, Cecilia B., Retchless, Adam C., Sidikou, Fati, Issaka, Bassira, Ousmane, Sani, Schwartz, Stephanie, Tate, Ashley H., Pana, Assimawè, Njanpop-Lafourcade, Berthe-Marie, Nzeyimana, Innocent, Nse,

Journal:

Emerging Infectious Diseases

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

18

Whole genome sequencing to characterize capsule locus and predict serogroup of invasive meningococcal isolates

Marjuki, Henju, Topaz, Nadav, Rodriguez-Rivera, Lorraine D., Ramos, Edward, Potts, Caelin C., Chen, Alexander, Retchless, Adam C., Doho, Gregory H., Wang, Xin

Journal:

Journal of Clinical Microbiology

Year:

2018

Language:

english

File:

PDF, 2.15 MB

english, 2018

19

Whole genome sequencing for investigations of meningococcal outbreaks in the United States: a retrospective analysis

Whaley, Melissa J., Joseph, Sandeep J., Retchless, Adam C., Kretz, Cecilia B., Blain, Amy, Hu, Fang, Chang, How-Yi, Mbaeyi, Sarah A., MacNeil, Jessica R., Read, Timothy D., Wang, Xin

Journal:

Scientific Reports

Year:

2018

Language:

english

File:

PDF, 4.84 MB

english, 2018

20

Genomic diversity and recombination among Xylella fastidiosa subspecies

Vanhove, Mathieu, Retchless, Adam C., Sicard, Anne, Rieux, Adrien, Coletta-Filho, Helvecio D., De La Fuente, Leonardo, Stenger, Drake C., Almeida, Rodrigo P.P.

Journal:

Applied and Environmental Microbiology

Year:

2019

Language:

english

File:

PDF, 2.09 MB

english, 2019

21

Genomic diversity and recombination among Xylella fastidiosa subspecies

Vanhove, Mathieu, Retchless, Adam C., Sicard, Anne, Rieux, Adrien, Coletta-Filho, Helvecio D., De La Fuente, Leonardo, Stenger, Drake C., Almeida, Rodrigo P.P.

Journal:

Applied and Environmental Microbiology

Year:

2019

File:

PDF, 2.09 MB

2019

22

Patterns of inter- and intrasubspecific homologous recombination inform eco-evolutionary dynamics of Xylella fastidiosa

Potnis, Neha, Kandel, Prem P., Merfa, Marcus V., Retchless, Adam C., Parker, Jennifer K., Stenger, Drake C., Almeida, Rodrigo P. P., Bergsma-Vlami, Maria, Westenberg, Marcel, Cobine, Paul A., De La Fu

Journal:

The ISME Journal

Year:

2019

Language:

english

File:

PDF, 2.55 MB

english, 2019

23

Patterns of inter- and intrasubspecific homologous recombination inform eco-evolutionary dynamics of Xylella fastidiosa

Potnis, Neha, Kandel, Prem P., Merfa, Marcus V., Retchless, Adam C., Parker, Jennifer K., Stenger, Drake C., Almeida, Rodrigo P. P., Bergsma-Vlami, Maria, Westenberg, Marcel, Cobine, Paul A., De La Fu

Journal:

The ISME Journal

Year:

2019

File:

PDF, 2.55 MB

2019

24

Genomic characterization of Haemophilus influenzae: a focus on the capsule locus

Potts, Caelin C., Topaz, Nadav, Rodriguez-Rivera, Lorraine D., Hu, Fang, Chang, How-Yi, Whaley, Melissa J., Schmink, Susanna, Retchless, Adam C., Chen, Alexander, Ramos, Edward, Doho, Gregory H., Wang

Journal:

Year:

2019

Language:

english

File:

PDF, 1.01 MB

english, 2019

25

A New Sequence Type of Neisseria meningitidis Serogroup C Associated With a 2016 Meningitis Outbreak in Mali

Sanogo, Yibayiri Osee, Guindo, Ibréhima, Diarra, Seydou, Retchless, Adam C, Abdou, Mahamadou, Coulibaly, Souleymane, Maiga, Mahamadou Farka, Coumaré, Mama, Diarra, Bakary, Chen, Alexander, Chang, How-

Journal:

The Journal of Infectious Diseases

Year:

2019

Language:

english

File:

PDF, 1.19 MB

english, 2019

26

Oropharyngeal microbiome of a college population following a meningococcal disease outbreak

Retchless, Adam C., Kretz, CÃ©cilia B., Rodriguez-Rivera, Lorraine D., Chen, Alexander, Soeters, Heidi M., Whaley, Melissa J., Wang, Xin

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.47 MB

2020

27

Î²-LactamaseâProducing, Ciprofloxacin-Resistant Neisseria meningitidis Isolated From a 5-Month-Old Boy in the United States

Taormina, Gillian, Campos, Joseph, Sweitzer, John, Retchless, Adam C, Lunquest, Kristy, McNamara, Lucy A, Reese, Natashia, Karlsson, Maria, Hanisch, Benjamin

Journal:

Journal of the Pediatric Infectious Diseases Society

Year:

2020

File:

PDF, 167 KB

2020

28

Carriage of Neisseria meningitidis in men who have sex with men presenting to public sexual health clinics, New York City

Ngai, Stephanie, Weiss, Don, Bell, Julie Anne, Majrud, Difaa, Zayas, Greicy, Crawley, Addie, Kornblum, John, Rodriguez-Rivera, Lorraine D., Quinlan, Tammy, Halse, Tanya A., Retchless, Adam C., MacNeil

Journal:

Sexually Transmitted Diseases

Year:

2020

File:

PDF, 171 KB

2020

29

Draft Whole-Genome Sequences of Xylella fastidiosa subsp. fastidiosa Strains TPD3 and TPD4, Isolated from Grapevines in Hou-li, Taiwan

Castillo, Andreina I., Tuan, Shu-Jen, Retchless, Adam C., Hu, Fei-Ting, Chang, Hsun-Yin, Almeida, Rodrigo P. P., Stedman, Kenneth M.

Journal:

Microbiology Resource Announcements

Year:

2019

File:

PDF, 289 KB

2019

30

Web-Based Genome Analysis of Bacterial Meningitis Pathogens for Public Health Applications Using the Bacterial Meningitis Genomic Analysis Platform (BMGAP)

Buono, Sean A., Kelly, Reagan J., Topaz, Nadav, Retchless, Adam C., Silva, Hideky, Chen, Alexander, Ramos, Edward, Doho, Gregory, Khan, Agha Nabeel, Okomo-Adhiambo, Margaret A., Hu, Fang, Marasini, Da

Journal:

Frontiers in Genetics

Year:

2020

File:

PDF, 1.30 MB

2020